Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs151253575 chr7:62134044 CTGTT/C 1.79E-6 366 24.47 20.23 11.82 KM Plot
CRC rs151283255 chr15:81260996 A/AAAAT 1.42E-5 371 22.4 20.2 8.53 KM Plot
CRC rs1530335 chr1:146685288 T/C 1.1E-5 373 11.13 26.12 21.9 KM Plot
CRC rs1530336 chr1:146685121 G/A 1.1E-5 373 11.13 26.12 21.9 KM Plot
CRC rs1540276 chr6:26028819 T/G 5.79E-5 369 18.5 25.18 20.35 KM Plot
CRC rs1569093 chr1:74841190 G/C 0 372 22.32 22.4 0.82 KM Plot
CRC rs1598385 chr7:61846655 A/G 4.46E-6 374 10.77 20.58 23.33 KM Plot
CRC rs16884079 chr5:54636361 G/T 6.69E-5 368 22.3 23.43 9.67 KM Plot
CRC rs16884108 chr5:54667489 G/A 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs16968311 chr15:76793621 C/T 1.63E-6 370 22.4 23.55 7.6 KM Plot
CRC rs16968319 chr15:76804730 G/C 1.65E-6 370 22.53 22.3 7.6 KM Plot
CRC rs16968336 chr15:76819715 A/C 1.15E-6 374 22.67 22.33 11.17 KM Plot
CRC rs16975106 chr15:95933957 A/G 3.31E-9 374 22.67 17.62 11.13 KM Plot
CRC rs17051856 chr8:24177318 C/T 5.16E-5 374 14.23 22.18 22.4 KM Plot
CRC rs17060853 chr8:22272167 C/T 0 374 22.32 22.73 1.63 KM Plot